Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015794864.1_cds_XP_016441210.1_3576
CDS Infomation

[gene=LOC107766839] [db_xref=GeneID:107766839] [protein=pentatricopeptide repeat-containing protein At2g41720-like] [protein_id=XP_016441210.1] [location=join(30580..30960,31986..32158,32854..32959,39281..40390,40750..40855,40943..41147,41581..41713,41856..41960,42711..42831,42910..42965)] [gbkey=CDS]
Sequence

ATGGCTACCATTCAAAATTCTCAAATCTTCCCACAACAACCAAATCCCACATTCAAAACC
CATTTCAGAACTGTTGTTACAGTCTGCCAAAGGCAGCAAAAACCCAAAAACAACAAACCC
TTTGAGGAGAAGAAGTTAGCTTCAGTTGACTATAACAAAGGGACACATAAAGTAGCTGTG
AAAATCAATGGATTTCGCAAATCTGATTTGCCTAAACACCAAAAATTACGGGTCCAAAGT
GATAGGTTTCAGAAAGATTGGGCTATTTCTGAACTTGTGGAGAAGATTATGAAGCTTAAT
CCTTGGGATGATGATATTGAAGGTTTATTGAATTGTTGGGTTGGCCGTTTTGCAAGAAAA
AACTTCCCTATTCTTATCAAGGAAATAAGTCAAATGGGTTCAATTGAACATAGCATCCAA
GTTTTCAATTGGATGAAAAGTCAGAAGAATTATTGTGCAAGAAGTGATATCTACAACATG
ATGATCAGGTTACATGCTAGACATAATCGGGTTGATCAGGCACGTGGCTTGTTTTTTGAG
ATGCAAAAGTGGAGGTGCCAACCTAATGTTGAGACCTACAATGCCCTTATCAGTGCACAT
GGTAGAGCTGGTCAATGGCGCTGGGCAAAGAATATCATGGAAGACATGCTCCGTGCTGCT
ATTCCACCAAATCGTTCAACTTACAACAACTTGATCAATGCATGTGGATCTAGTGGAAAT
TGGAGAGAGGCTCTTAAAGTTTGCAAAGAAATGACTGAAAACGGAGTTGGACCTGACCTG
GTGACGCATAATATTGTCTTATCTGCCTATAAAAATGGGGAACAGTATGCAAAAGCCCTT
TCCTATTTTGAACTTATGAAGGGAACTAAAGTCCGTCCTGACACTACGACCCTTAATATT
GTGATACACTGTCTTGTAAAGCTTGGGGAATATGAGAAAGCTGTTGAGATATTTAACTCA
ATGAGAGGGAAACGAGCTGAATGTAATCCTGACATAGTCACATTTACAACTATCATGCAC
ATGTATTCTGTTTCTGGCCAGATTAAAAACTGCGAGGCTGCTTTTAACACAATGATTGCA
GAAGGTCTGAAACCTAATATCGTTTCATATAATACCTTAGTAGGTGCTTATGCTTCACAT
GGGATGGCTCAGGAAGCTTTGTCAATTGTTGATGAGATGAAAACTAATGGCATCCGCCCC
GATGTTGTGTCTTATACGTCTTTACTCAATGCCTATGGGAGATCAGAACAGCCTGAAAGG
GCCATGGAAACATTTGAAAGGATGAAAAGAAACAATTTGAAACCAAATTTGGTTAGTTAT
AATGTACTAATTGATGCTTATGGATCTAATGGTCTTCTGGACAAGGCTGTCCAAGTGCTG
CGTGAAATGGAACATGATGGCTTACAGCCCAATGTTGTTACTATTTCTACCTTATTGGCT
GCAAGTGGTCGCTGTAGTCAGAAAGTGAACATTGATTCCATCCTAACGGCTGCGAAAATG
CGGGGAATTGAGTTGAATACGGTCGCCTATAACTCCGCTCTTGGGAGTTATCTGAATGTT
GGTGAATATGAAAAAGCGTTGGCCCTATACAGGTCAATGAGGAAAAATAAAGTTATGCCT
GATCCTGTGACGTATAATGTGTTGATAAGTGGTTGTTGTAGAATGTCAAATTATTCGGAT
GCACTTGAATTTCTTGATGAGATGATAGATCTGAAGATTCCTTTGACAAAGGAGGTGTGT
TCCTCTGCGATATGCGCTTACACTAAGCAGGGTCAATTTGACAAGGCAGAATCTATGTTT
TCGATGATGAAAATGGAAGGCTTTCATCCTGATGTCATTGCCTATACAACAATGCTAAAT
GCATATAGTGTTGGAGAGAACTGGGAGAAAGCTTTTGCAGTATTTCAAGATATGGAATTG
AATGATGTTCACCCAGATGCTATTGCTTGTTCAGCTCTCATGAGGTCTTTTAATAGAGGA
TGCCAACCTGACAAAGTTTTGCTTGTGGCGGATTTTATGCGAGAGAGAAATATCCCTTTC
ACCGAGGCTGTTTTATTTGAATTGGTCTCCGCCAGCAGCATGTTACGAGATTGGAGGATG
ATTACAGAAATTATTACAATAATGGAGGCTTCACTCTCGTATGTGTCTGTTGGAACTCTA
AACCAGCTTCTGCATAGTATTGGCAAATCTGGGAAGATTGAAACCATGATAAAATTTTTC
TATAAGGTAGTCACATCAGGCGCAGAAGTTAACTTAGCAACCTATTCAGTTCTGCTGAAA
AATCTTTTGGCTGCTGGAAATTGGAGGAAATATGTTGAGGTGTTGGAGTGGATGGAGGAT
GGAGGGATTCAACCAGCAAGTAATATGTATGAGGATATACTCTTCTTTGCTCAACATAGT
GCGGGGACTGAAAATGCTGCTGTAATAAAACAACGACTAGGATCCTTGAGAAAGAAATCG
GGACATGAAACAGCGAATGAGCTGCAGTTAAGATAA

Peptide Sequence

PEP ID

XP_016441210.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Nicotiana tabacum]
Sequence

MATIQNSQIFPQQPNPTFKTHFRTVVTVCQRQQKPKNNKPFEEKKLASVDYNKGTHKVAV
KINGFRKSDLPKHQKLRVQSDRFQKDWAISELVEKIMKLNPWDDDIEGLLNCWVGRFARK
NFPILIKEISQMGSIEHSIQVFNWMKSQKNYCARSDIYNMMIRLHARHNRVDQARGLFFE
MQKWRCQPNVETYNALISAHGRAGQWRWAKNIMEDMLRAAIPPNRSTYNNLINACGSSGN
WREALKVCKEMTENGVGPDLVTHNIVLSAYKNGEQYAKALSYFELMKGTKVRPDTTTLNI
VIHCLVKLGEYEKAVEIFNSMRGKRAECNPDIVTFTTIMHMYSVSGQIKNCEAAFNTMIA
EGLKPNIVSYNTLVGAYASHGMAQEALSIVDEMKTNGIRPDVVSYTSLLNAYGRSEQPER
AMETFERMKRNNLKPNLVSYNVLIDAYGSNGLLDKAVQVLREMEHDGLQPNVVTISTLLA
ASGRCSQKVNIDSILTAAKMRGIELNTVAYNSALGSYLNVGEYEKALALYRSMRKNKVMP
DPVTYNVLISGCCRMSNYSDALEFLDEMIDLKIPLTKEVCSSAICAYTKQGQFDKAESMF
SMMKMEGFHPDVIAYTTMLNAYSVGENWEKAFAVFQDMELNDVHPDAIACSALMRSFNRG
CQPDKVLLVADFMRERNIPFTEAVLFELVSASSMLRDWRMITEIITIMEASLSYVSVGTL
NQLLHSIGKSGKIETMIKFFYKVVTSGAEVNLATYSVLLKNLLAAGNWRKYVEVLEWMED
GGIQPASNMYEDILFFAQHSAGTENAAVIKQRLGSLRKKSGHETANELQLR

Transcript Sequence

Gene sequence data has not been registered.